Levels: Primary, Middle, High, Other
| Name | Level |
|---|---|
| Battery Creek High | High |
| Beaufort Elementary | Primary |
| Beaufort High | High |
| Beaufort Middle | Middle |
| Bluffton Elementary | Primary |
| Bluffton High | High |
| Broad River Elementary | Primary |
| Coosa Elementary | Primary |
| H. E. McCracken Middle | Other/Ungraded |
| Hilton Head Island Early Childhood Center | Primary |
| Hilton Head Island Elementary | Primary |
| Hilton Head Island Elementary School for the Creative Arts | Primary |
| Hilton Head Island High | High |
| Hilton Head Island Middle | Middle |
| Joseph S. Shanklin Elementary | Primary |
| Lady's Island Elementary | Primary |
| Lady's Island Middle | Middle |
| Michael C. Riley Elementary | Primary |
| Mossy Oaks Elementary | Primary |
| Okatie Elementary | Primary |
| Port Royal Elementary | Primary |
| Red Cedar Elementary | Primary |
| Riverview Charter School | Primary |
| St. Helena Elementary | Primary |
| Whale Branch Elementary | Primary |
| Whale Branch Middle | Middle |
Levels: Primary, Middle, High, Other
Levels: Elementary School, Secondary School, Other - mixed grades
| Name | Level |
|---|---|
| Agape Christian Academy | Mixed Grades |
| Beaufort Christian School | Mixed Grades |
| Cross Schools | Elementary |
| Heritage Academy | Mixed Grades |
| Hilton Head Christian Academy | Mixed Grades |
| Hilton Head Preparatory School | Mixed Grades |
| St. Francis Catholic School | Elementary |
Levels: Elementary School, Secondary School, Other - mixed grades
